phAlignment2anchors.pl

homology detection tool across multiple large genomes (common files)

Install

All systems
curl cmd.cat/phAlignment2anchors.pl.sh
Debian Debian
apt-get install murasaki-common
Ubuntu
apt-get install murasaki-common
image/svg+xml Kali Linux
apt-get install murasaki-common
Raspbian
apt-get install murasaki-common

murasaki-common

homology detection tool across multiple large genomes (common files)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction This package contains all files that are common to the single core murasaki package and the multi core murasaki-mpi package.