phmmer
profile hidden Markov models for protein sequence analysis
Install
- All systems
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curl cmd.cat/phmmer.sh
- Debian
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apt-get install hmmer - Ubuntu
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apt-get install hmmer - Kali Linux
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apt-get install hmmer - Fedora
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dnf install hmmer - Windows (WSL2)
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sudo apt-get updatesudo apt-get install hmmer - OS X
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brew install hmmer - Raspbian
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apt-get install hmmer - Dockerfile
- dockerfile.run/phmmer
hmmer
profile hidden Markov models for protein sequence analysis
HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.