phybin
binning/clustering newick trees by topology
Install
- All systems
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curl cmd.cat/phybin.sh
- Debian
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apt-get install phybin - Ubuntu
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apt-get install phybin - Kali Linux
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apt-get install phybin - Windows (WSL2)
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sudo apt-get updatesudo apt-get install phybin - Raspbian
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apt-get install phybin - Dockerfile
- dockerfile.run/phybin
phybin
binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies. It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix. phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).