poa
Partial Order Alignment for multiple sequence alignment
Install
- All systems
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curl cmd.cat/poa.sh
- Debian
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apt-get install poa - Ubuntu
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apt-get install poa - Kali Linux
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apt-get install poa - Windows (WSL2)
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sudo apt-get updatesudo apt-get install poa - Raspbian
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apt-get install poa - Dockerfile
- dockerfile.run/poa
poa
Partial Order Alignment for multiple sequence alignment
POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.