populations

pipeline for building loci from short-read DNA sequences

Install

All systems
curl cmd.cat/populations.sh
Debian Debian
apt-get install populations
Ubuntu
apt-get install populations
image/svg+xml Kali Linux
apt-get install populations
Windows (WSL2)
sudo apt-get update sudo apt-get install populations
Raspbian
apt-get install populations
Dockerfile
dockerfile.run/populations

stacks

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

populations

population genetic software

Populations is a population genetic software. It computes genetic distances between populations or individuals. It builds phylogenetic trees (NJ or UPGMA) with bootstrap values.