porechop

adapter trimmer for Oxford Nanopore reads

Install

All systems
curl cmd.cat/porechop.sh
Debian Debian
apt-get install porechop
Ubuntu
apt-get install porechop
image/svg+xml Kali Linux
apt-get install porechop
Windows (WSL2)
sudo apt-get update sudo apt-get install porechop
Dockerfile
dockerfile.run/porechop

porechop

adapter trimmer for Oxford Nanopore reads

Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.