porechop
adapter trimmer for Oxford Nanopore reads
Install
- All systems
-
curl cmd.cat/porechop.sh
- Debian
-
apt-get install porechop - Ubuntu
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apt-get install porechop - Kali Linux
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apt-get install porechop - Windows (WSL2)
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sudo apt-get updatesudo apt-get install porechop - Dockerfile
- dockerfile.run/porechop
porechop
adapter trimmer for Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.