mirmon

monitor the state of mirrors

Mirmon helps administrators in keeping an eye on the mirror sites. In a concise graphic format, mirmon shows each site's status history of the last two weeks. It is easy to spot stale or dead mirrors.

cmtk

Computational Morphometry Toolkit

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O. The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).

king-probe

Evaluate and visualize protein interatomic packing

king-probe is a program that allows one to evaluate atomic packing, either within or between molecules. It generates "contact dots" where atoms are in close contact. The program king-probe generates "contact dots" at points on the van der Waals surface of atoms which are in close proximity to other atoms; reading atomic coordinates in protein databank (PDB) format files and writing color-coded dot lists (spikes where atoms clash) for inclusion in a kinemage.