proftmb

per-residue prediction of bacterial transmembrane beta barrels

proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops.

proftmb-dbg

debugging symbols for proftmb

proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. This package contains the detached debug symbols.