proteinortho5

Detection of (Co-)orthologs in large-scale protein analysis

Install

All systems
curl cmd.cat/proteinortho5.sh
Debian Debian
apt-get install proteinortho
Ubuntu
apt-get install proteinortho
image/svg+xml Kali Linux
apt-get install proteinortho
Windows (WSL2)
sudo apt-get update sudo apt-get install proteinortho
Raspbian
apt-get install proteinortho
Dockerfile
dockerfile.run/proteinortho5

proteinortho

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.