psi-cd-hit
suite of programs designed to quickly group sequences
Install
- All systems
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curl cmd.cat/psi-cd-hit.sh
- Debian
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apt-get install cd-hit - Ubuntu
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apt-get install cd-hit - Kali Linux
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apt-get install cd-hit - Windows (WSL2)
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sudo apt-get updatesudo apt-get install cd-hit - Raspbian
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apt-get install cd-hit - Dockerfile
- dockerfile.run/psi-cd-hit
cd-hit
suite of programs designed to quickly group sequences
cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.