pull_reads_with_kmers
RNA-Seq De novo Assembly
Install
- All systems
-
curl cmd.cat/pull_reads_with_kmers.sh
- Debian
-
apt-get install trinityrnaseq
- Ubuntu
-
apt-get install trinityrnaseq
- Kali Linux
-
apt-get install trinityrnaseq
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install trinityrnaseq
- Dockerfile
- dockerfile.run/pull_reads_with_kmers
trinityrnaseq
RNA-Seq De novo Assembly
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.