qcumber

quality control of genomic sequences

Install

All systems
curl cmd.cat/qcumber.sh
Debian Debian
apt-get install qcumber
Ubuntu
apt-get install qcumber
image/svg+xml Kali Linux
apt-get install qcumber
Windows (WSL2)
sudo apt-get update sudo apt-get install qcumber
Dockerfile
dockerfile.run/qcumber

qcumber

quality control of genomic sequences

QCPipeline is a tool for quality control. The workflow is as follows: 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken