rdp_classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

Install

All systems
curl cmd.cat/rdp_classifier.sh
Debian Debian
apt-get install rdp-classifier
Ubuntu
apt-get install rdp-classifier
image/svg+xml Kali Linux
apt-get install rdp-classifier
Raspbian
apt-get install rdp-classifier

rdp-classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial and archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies.