ref_map

pipeline for building loci from short-read DNA sequences

Install

All systems
curl cmd.cat/ref_map.sh
Debian Debian
apt-get install stacks
Ubuntu
apt-get install stacks
image/svg+xml Kali Linux
apt-get install stacks
Windows (WSL2)
sudo apt-get update sudo apt-get install stacks
Raspbian
apt-get install stacks
Dockerfile
dockerfile.run/ref_map

stacks

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>