rtax
Classification of sequence reads of 16S ribosomal RNA gene
Install
- All systems
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curl cmd.cat/rtax.sh
- Debian
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apt-get install rtax - Ubuntu
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apt-get install rtax - Kali Linux
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apt-get install rtax - Windows (WSL2)
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sudo apt-get updatesudo apt-get install rtax - Raspbian
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apt-get install rtax - Dockerfile
- dockerfile.run/rtax
rtax
Classification of sequence reads of 16S ribosomal RNA gene
Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm.