run_lefse
determine features of organisms, clades, taxonomic units, genes
Install
- All systems
-
curl cmd.cat/run_lefse.sh
- Debian
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apt-get install lefse - Ubuntu
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apt-get install lefse - Kali Linux
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apt-get install lefse - Windows (WSL2)
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sudo apt-get updatesudo apt-get install lefse - Raspbian
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apt-get install lefse - Dockerfile
- dockerfile.run/run_lefse
lefse
determine features of organisms, clades, taxonomic units, genes
LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.