scopparse
Extra EMBOSS commands to handle domain classification file
Install
- All systems
-
curl cmd.cat/scopparse.sh
- Debian
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apt-get install embassy-domainatrix - Ubuntu
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apt-get install embassy-domainatrix - Kali Linux
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apt-get install embassy-domainatrix - Windows (WSL2)
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sudo apt-get updatesudo apt-get install embassy-domainatrix - Raspbian
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apt-get install embassy-domainatrix - Dockerfile
- dockerfile.run/scopparse
embassy-domainatrix
Extra EMBOSS commands to handle domain classification file
The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. Applications in the current domainatrix release are cathparse (generates DCF file from raw CATH files), domainnr (removes redundant domains from a DCF file), domainreso (removes low resolution domains from a DCF file), domainseqs (adds sequence records to a DCF file), domainsse (adds secondary structure records to a DCF file), scopparse (generates DCF file from raw SCOP files) and ssematch (searches a DCF file for secondary structure matches).