screed

short nucleotide read sequence utils in Python 3

Install

All systems
curl cmd.cat/screed.sh
Debian Debian
apt-get install python3-screed
Ubuntu
apt-get install python3-screed
image/svg+xml Kali Linux
apt-get install python3-screed
Windows (WSL2)
sudo apt-get update sudo apt-get install python3-screed
Raspbian
apt-get install python3-screed
Dockerfile
dockerfile.run/screed

python3-screed

short nucleotide read sequence utils in Python 3

Screed parses FASTA and FASTQ files, generates databases, and lets you query these databases. Values such as sequence name, sequence description, sequence quality, and the sequence itself can be retrieved from these databases. This is the Python 3 version.