scythe
Bayesian adaptor trimmer for sequencing reads
Install
- All systems
-
curl cmd.cat/scythe.sh
- Debian
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apt-get install scythe - Ubuntu
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apt-get install scythe - Kali Linux
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apt-get install scythe - Windows (WSL2)
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sudo apt-get updatesudo apt-get install scythe - Raspbian
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apt-get install scythe - Dockerfile
- dockerfile.run/scythe
scythe
Bayesian adaptor trimmer for sequencing reads
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.