sdpMatcher

mapping single-molecule sequencing reads

Install

All systems
curl cmd.cat/sdpMatcher.sh
Debian Debian
apt-get install blasr
Ubuntu
apt-get install blasr
Windows (WSL2)
sudo apt-get update sudo apt-get install blasr
Raspbian
apt-get install blasr
Dockerfile
dockerfile.run/sdpMatcher

blasr

mapping single-molecule sequencing reads

Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error.