seqalign

Extra EMBOSS commands for protein domain alignment

Install

All systems
curl cmd.cat/seqalign.sh
Debian Debian
apt-get install embassy-domalign
Ubuntu
apt-get install embassy-domalign
image/svg+xml Kali Linux
apt-get install embassy-domalign
Windows (WSL2)
sudo apt-get update sudo apt-get install embassy-domalign
Raspbian
apt-get install embassy-domalign
Dockerfile
dockerfile.run/seqalign

embassy-domalign

Extra EMBOSS commands for protein domain alignment

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).