seqdb_perf
next generation suite of BLAST sequence search tools
Install
- All systems
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curl cmd.cat/seqdb_perf.sh
- Debian
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apt-get install ncbi-blast+ - Ubuntu
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apt-get install ncbi-blast+ - Kali Linux
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apt-get install ncbi-blast+ - Fedora
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dnf install ncbi-blast+ - Windows (WSL2)
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sudo apt-get updatesudo apt-get install ncbi-blast+ - Raspbian
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apt-get install ncbi-blast+ - Dockerfile
- dockerfile.run/seqdb_perf
ncbi-blast+
next generation suite of BLAST sequence search tools
The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.