seqfraggle

Extra EMBOSS commands to search for protein domains

Install

All systems
curl cmd.cat/seqfraggle.sh
Debian Debian
apt-get install embassy-domsearch
Ubuntu
apt-get install embassy-domsearch
image/svg+xml Kali Linux
apt-get install embassy-domsearch
Windows (WSL2)
sudo apt-get update sudo apt-get install embassy-domsearch
Raspbian
apt-get install embassy-domsearch
Dockerfile
dockerfile.run/seqfraggle

embassy-domsearch

Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).