seqmagick
imagemagick-like frontend to Biopython SeqIO
Install
- All systems
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curl cmd.cat/seqmagick.sh
- Debian
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apt-get install seqmagick - Ubuntu
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apt-get install seqmagick - Kali Linux
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apt-get install seqmagick - Windows (WSL2)
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sudo apt-get updatesudo apt-get install seqmagick - Dockerfile
- dockerfile.run/seqmagick
seqmagick
imagemagick-like frontend to Biopython SeqIO
Seqmagick is a little utility to expose the file format conversion in BioPython in a convenient way. Features include: * Modifying sequences: - Remove gaps - Reverse & reverse complement - Trim to a range of residues - Change case - Sort by length or ID * Displaying information about sequence files * Subsetting sequence files by: - Position - ID - Deduplication * Filtering sequences by quality score * Trimming alignments to a region of interest defined by the forward and reverse primers