sga
de novo genome assembler that uses string graphs
Install
- All systems
-
curl cmd.cat/sga.sh
- Debian
-
apt-get install sga
- Ubuntu
-
apt-get install sga
- Kali Linux
-
apt-get install sga
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install sga
- Raspbian
-
apt-get install sga
- Dockerfile
- dockerfile.run/sga
sga
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.