sga-bam2de
de novo genome assembler that uses string graphs
Install
- All systems
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curl cmd.cat/sga-bam2de.sh
- Debian
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apt-get install sga - Ubuntu
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apt-get install sga - Kali Linux
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apt-get install sga - Windows (WSL2)
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sudo apt-get updatesudo apt-get install sga - Raspbian
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apt-get install sga - Dockerfile
- dockerfile.run/sga-bam2de
sga
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.