showtree

bayesian estimation of gene trees taking the species tree into account

Install

All systems
curl cmd.cat/showtree.sh
Debian Debian
apt-get install prime-phylo
Ubuntu
apt-get install prime-phylo
image/svg+xml Kali Linux
apt-get install prime-phylo
Windows (WSL2)
sudo apt-get update sudo apt-get install prime-phylo
Raspbian
apt-get install prime-phylo
Dockerfile
dockerfile.run/showtree

prime-phylo

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees. The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.