smithwaterman
determine similar regions between two strings or genomic sequences
Install
- All systems
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curl cmd.cat/smithwaterman.sh
- Debian
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apt-get install smithwaterman - Ubuntu
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apt-get install smithwaterman - Kali Linux
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apt-get install smithwaterman - Windows (WSL2)
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sudo apt-get updatesudo apt-get install smithwaterman - Raspbian
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apt-get install smithwaterman - Dockerfile
- dockerfile.run/smithwaterman
smithwaterman
determine similar regions between two strings or genomic sequences
The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure.