sniffles
structural variation caller using third-generation sequencing
Install
- All systems
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curl cmd.cat/sniffles.sh
- Debian
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apt-get install sniffles - Ubuntu
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apt-get install sniffles - Kali Linux
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apt-get install sniffles - Windows (WSL2)
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sudo apt-get updatesudo apt-get install sniffles - Raspbian
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apt-get install sniffles - Dockerfile
- dockerfile.run/sniffles
sniffles
structural variation caller using third-generation sequencing
Sniffles is a structural variation (SV) caller using third-generation sequencing data such as those from Pacific Biosciences or Oxford Nanopore platforms. It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and coverage analysis.