sort_read_pairs
pipeline for building loci from short-read DNA sequences
Install
- All systems
-
curl cmd.cat/sort_read_pairs.sh
- Debian
-
apt-get install stacks
- Ubuntu
-
apt-get install stacks
- Kali Linux
-
apt-get install stacks
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install stacks
- Raspbian
-
apt-get install stacks
- Dockerfile
- dockerfile.run/sort_read_pairs
stacks
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>