spoa
SIMD partial order alignment tool
Install
- All systems
-
curl cmd.cat/spoa.sh
- Debian
-
apt-get install spoa - Ubuntu
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apt-get install spoa - Kali Linux
-
apt-get install spoa - Windows (WSL2)
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sudo apt-get updatesudo apt-get install spoa - Dockerfile
- dockerfile.run/spoa
spoa
SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).