ssw-align
Smith-Waterman aligner based on libssw
Install
- All systems
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curl cmd.cat/ssw-align.sh
- Debian
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apt-get install ssw-align - Ubuntu
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apt-get install ssw-align - Kali Linux
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apt-get install ssw-align - Windows (WSL2)
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sudo apt-get updatesudo apt-get install ssw-align - Dockerfile
- dockerfile.run/ssw-align
ssw-align
Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.