ssw_test

Smith-Waterman aligner based on libssw

Install

All systems
curl cmd.cat/ssw_test.sh
Debian Debian
apt-get install ssw-align
Ubuntu
apt-get install ssw-align
image/svg+xml Kali Linux
apt-get install ssw-align
Windows (WSL2)
sudo apt-get update sudo apt-get install ssw-align
Dockerfile
dockerfile.run/ssw_test

ssw-align

Smith-Waterman aligner based on libssw

This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.