stacks-setup-database
web interface for displaying loci from short-read sequences
Install
- All systems
-
curl cmd.cat/stacks-setup-database.sh
- Debian
-
apt-get install stacks-web - Ubuntu
-
apt-get install stacks-web - Kali Linux
-
apt-get install stacks-web - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install stacks-web - Raspbian
-
apt-get install stacks-web - Dockerfile
- dockerfile.run/stacks-setup-database
stacks-web
web interface for displaying loci from short-read sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. This package provides the web-based viewer which you can use to examine Stacks output that has been loaded into a MySQL database.