subjunc
toolkit for processing next-gen sequencing data
Install
- All systems
-
curl cmd.cat/subjunc.sh
- Debian
-
apt-get install subread
- Ubuntu
-
apt-get install subread
- Kali Linux
-
apt-get install subread
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install subread
- Raspbian
-
apt-get install subread
- Dockerfile
- dockerfile.run/subjunc
subread
toolkit for processing next-gen sequencing data
Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.