swarm
robust and fast clustering method for amplicon-based studies
Install
- All systems
-
curl cmd.cat/swarm.sh
- Debian
-
apt-get install swarm - Ubuntu
-
apt-get install swarm - Arch Linux
-
pacman -S swarm - Kali Linux
-
apt-get install swarm - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install swarm - Dockerfile
- dockerfile.run/swarm
swarm
robust and fast clustering method for amplicon-based studies
The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold d, the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.