swarm

robust and fast clustering method for amplicon-based studies

Install

All systems
curl cmd.cat/swarm.sh
Debian Debian
apt-get install swarm
Ubuntu
apt-get install swarm
Arch Arch Linux
pacman -S swarm
image/svg+xml Kali Linux
apt-get install swarm
Windows (WSL2)
sudo apt-get update sudo apt-get install swarm

swarm

robust and fast clustering method for amplicon-based studies

The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold d, the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.

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Official golang implementation of the Ethereum protocol