t_coffee
Multiple Sequence Alignment
Install
- All systems
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curl cmd.cat/t_coffee.sh
- Debian
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apt-get install t-coffee - Ubuntu
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apt-get install t-coffee - Kali Linux
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apt-get install t-coffee - Windows (WSL2)
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sudo apt-get updatesudo apt-get install t-coffee - Raspbian
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apt-get install t-coffee - Dockerfile
- dockerfile.run/t_coffee
t-coffee
Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.