tabix
generic indexer for TAB-delimited genome position files
Install
- All systems
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curl cmd.cat/tabix.sh
- Debian
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apt-get install tabix - Ubuntu
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apt-get install tabix - Kali Linux
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apt-get install tabix - Windows (WSL2)
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sudo apt-get updatesudo apt-get install tabix - Raspbian
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apt-get install tabix - Dockerfile
- dockerfile.run/tabix
tabix
generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. This version of tabix is built from the HTSlib source.