tantan
low complexity and tandem repeat masker for biosequences
Install
- All systems
-
curl cmd.cat/tantan.sh
- Debian
-
apt-get install tantan - Ubuntu
-
apt-get install tantan - Kali Linux
-
apt-get install tantan - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install tantan - Raspbian
-
apt-get install tantan - Dockerfile
- dockerfile.run/tantan
tantan
low complexity and tandem repeat masker for biosequences
tantan is a tool to mask simple regions (low complexity and short-period tandem repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent false predictions when searching for homologous regions between two sequences. Simple repeats often align strongly to each other, causing false homology predictions.