taxblast

NCBI libraries for biology applications (text-based utilities)

Install

All systems
curl cmd.cat/taxblast.sh
Debian Debian
apt-get install ncbi-tools-bin
Ubuntu
apt-get install ncbi-tools-bin
image/svg+xml Kali Linux
apt-get install ncbi-tools-bin
Windows (WSL2)
sudo apt-get update sudo apt-get install ncbi-tools-bin
Raspbian
apt-get install ncbi-tools-bin
Dockerfile
dockerfile.run/taxblast

ncbi-tools-bin

NCBI libraries for biology applications (text-based utilities)

This package includes various utilities distributed with the NCBI C SDK, including the development tools asntool and errhdr (formerly of libncbi6-dev). None of the programs in this package require X; you can find the X-based utilities in the ncbi-tools-x11 package. BLAST and related tools now come from a separate source base, corresponding to the ncbi-blast+ and ncbi-blast+-legacy packages.

blast2

Basic Local Alignment Search Tool

The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user. Note that databases are not included in Debian; they must be retrieved manually.