tqs
genomics application for assembling millions of very short DNA sequences
Install
- All systems
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curl cmd.cat/tqs.sh
- Debian
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apt-get install ssake - Ubuntu
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apt-get install ssake - Kali Linux
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apt-get install ssake - Windows (WSL2)
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sudo apt-get updatesudo apt-get install ssake - Raspbian
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apt-get install ssake - Dockerfile
- dockerfile.run/tqs
ssake
genomics application for assembling millions of very short DNA sequences
The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.