tree-ppuzzle

Parallelized reconstruction of phylogenetic trees by maximum likelihood

Install

All systems
curl cmd.cat/tree-ppuzzle.sh
Debian Debian
apt-get install tree-ppuzzle
Ubuntu
apt-get install tree-ppuzzle
image/svg+xml Kali Linux
apt-get install tree-ppuzzle
Windows (WSL2)
sudo apt-get update sudo apt-get install tree-ppuzzle
Raspbian
apt-get install tree-ppuzzle
Dockerfile
dockerfile.run/tree-ppuzzle

tree-ppuzzle

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. This is the parallelized version of tree-puzzle.