tree-puzzle
Reconstruction of phylogenetic trees by maximum likelihood
Install
- All systems
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curl cmd.cat/tree-puzzle.sh
- Debian
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apt-get install tree-puzzle - Ubuntu
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apt-get install tree-puzzle - Kali Linux
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apt-get install tree-puzzle - Windows (WSL2)
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sudo apt-get updatesudo apt-get install tree-puzzle - Raspbian
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apt-get install tree-puzzle - Dockerfile
- dockerfile.run/tree-puzzle
tree-puzzle
Reconstruction of phylogenetic trees by maximum likelihood
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.