command-not-found.com – typeHLA.js

typeHLA.js

Burrows-Wheeler Aligner

Maintainer: Debian Med Packaging Team <[email protected]>
Homepage: http://bio-bwa.sourceforge.net/
Section: science

All systems: curl cmd.cat/typeHLA.js.sh
Debian: apt-get install bwa
Ubuntu: apt-get install bwa
Kali Linux: apt-get install bwa
Fedora: dnf install bwa
Windows (WSL2): sudo apt-get update sudo apt-get install bwa
OS X: brew install bwa
Raspbian: apt-get install bwa
Dockerfile: dockerfile.run/typeHLA.js

bwa

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.