unicycler_align
hybrid assembly pipeline for bacterial genomes
Install
- All systems
-
curl cmd.cat/unicycler_align.sh
- Debian
-
apt-get install unicycler
- Ubuntu
-
apt-get install unicycler
- Kali Linux
-
apt-get install unicycler
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install unicycler
- Dockerfile
- dockerfile.run/unicycler_align
unicycler
hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.