unicycler_scrub

hybrid assembly pipeline for bacterial genomes

Install

All systems
curl cmd.cat/unicycler_scrub.sh
Debian Debian
apt-get install unicycler
Ubuntu
apt-get install unicycler
image/svg+xml Kali Linux
apt-get install unicycler
Windows (WSL2)
sudo apt-get update sudo apt-get install unicycler
Dockerfile
dockerfile.run/unicycler_scrub

unicycler

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.