varscan
variant detection in next-generation sequencing data
Install
- All systems
-
curl cmd.cat/varscan.sh
- Ubuntu
-
apt-get install varscan - Kali Linux
-
apt-get install varscan - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install varscan - Dockerfile
- dockerfile.run/varscan
varscan
variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes.