velvetg
Nucleic acid sequence assembler for very short reads
Install
- All systems
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curl cmd.cat/velvetg.sh
- Debian
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apt-get install velvet - Ubuntu
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apt-get install velvet - Kali Linux
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apt-get install velvet - Windows (WSL2)
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sudo apt-get updatesudo apt-get install velvet - Raspbian
-
apt-get install velvet - Dockerfile
- dockerfile.run/velvetg
velvet
Nucleic acid sequence assembler for very short reads
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.