velvetg

Nucleic acid sequence assembler for very short reads

Install

All systems
curl cmd.cat/velvetg.sh
Debian Debian
apt-get install velvet
Ubuntu
apt-get install velvet
image/svg+xml Kali Linux
apt-get install velvet
Windows (WSL2)
sudo apt-get update sudo apt-get install velvet
Raspbian
apt-get install velvet
Dockerfile
dockerfile.run/velvetg

velvet

Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.