velvetg_long

Nucleic acid sequence assembler for very short reads, long version

Install

All systems
curl cmd.cat/velvetg_long.sh
Debian Debian
apt-get install velvet-long
Ubuntu
apt-get install velvet-long
image/svg+xml Kali Linux
apt-get install velvet-long
Raspbian
apt-get install velvet-long

velvet-long

Nucleic acid sequence assembler for very short reads, long version

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs. This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.