velveth_long
Nucleic acid sequence assembler for very short reads, long version
Install
- All systems
-
curl cmd.cat/velveth_long.sh
- Debian
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apt-get install velvet-long - Ubuntu
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apt-get install velvet-long - Kali Linux
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apt-get install velvet-long - Windows (WSL2)
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sudo apt-get updatesudo apt-get install velvet-long - Raspbian
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apt-get install velvet-long - Dockerfile
- dockerfile.run/velveth_long
velvet-long
Nucleic acid sequence assembler for very short reads, long version
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs. This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.